生信

Metagenomic data analysis code

宏基因组生信方法以及代码记录

Posted by zichuana on January 23, 2025

Metagenomics Basic Data Processing Code Manual

link

catalogue

  1. Data Acquisition (prefetch)

  2. Quality Control (fastqc)

  3. Adapter Removal and Contaminant Filtering (cutadapt)

  4. Obtain ASV Feature Table and Taxonomic Annotation Table (dada2)

  5. Genome Assembly (megahit)

  6. Species Composition Analysis

  7. Community α- and β-Diversity Analysis

  8. Species Differential Analysis

  9. Community Differential Analysis

  10. Generate OTU Table (qiime2)

  11. Community Functional Prediction (PICRUSt2)

CATALOG